Mercurial > repos > rv43 > chess_tomo

comparison workflow/run_tomo.py @ 27:7d9cf7592ad1 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 17:56:17 +0000
parents 0891477bcb16
children 562fc79de827
comparison
equal deleted inserted replaced
26:dfe7105739fa 27:7d9cf7592ad1
986 x_sum_min = x_sum.min() 986 x_sum_min = x_sum.min()
987 x_sum_max = x_sum.max() 987 x_sum_max = x_sum.max()
988 if self.galaxy_flag: 988 if self.galaxy_flag:
989 if img_x_bounds is None: 989 if img_x_bounds is None:
990 img_x_bounds = (0, first_image.shape[0]) 990 img_x_bounds = (0, first_image.shape[0])
991 elif not is_index_range(img_x_bounds, ge=0, le=first_image.shape[0]): 991 elif is_int_pair(img_x_bounds, ge=-1, le=first_image.shape[0]):
992 if img_x_bounds[0] == -1:
993 img_x_bounds[0] = 0
994 if img_x_bounds[1] == -1:
995 img_x_bounds[1] = first_image.shape[0]
996 if is_index_range(img_x_bounds, ge=0, le=first_image.shape[0]):
992 raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})') 997 raise ValueError(f'Invalid parameter img_x_bounds ({img_x_bounds})')
993 else: 998 else:
994 quick_imshow(first_image, title=title) 999 quick_imshow(first_image, title=title)
995 print('Select vertical data reduction range from first tomography image') 1000 print('Select vertical data reduction range from first tomography image')
996 img_x_bounds = select_image_bounds(first_image, 0, title=title) 1001 img_x_bounds = select_image_bounds(first_image, 0, title=title)