Mercurial > repos > rv43 > chess_tomo

comparison workflow/run_tomo.py @ 9:1dbb29320ce8 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Mon, 20 Mar 2023 19:26:17 +0000
parents c99fc6a32869
children 9c48ef48c604
comparison
equal deleted inserted replaced
8:c99fc6a32869 9:1dbb29320ce8
162 logger.warning(f'num_core = {self.num_core} is larger than the number of available ' 162 logger.warning(f'num_core = {self.num_core} is larger than the number of available '
163 f'processors and reduced to {cpu_count()}') 163 f'processors and reduced to {cpu_count()}')
164 self.num_core= cpu_count() 164 self.num_core= cpu_count()
165 165
166 def read(self, filename): 166 def read(self, filename):
167 print(f'looking for {filename}') 167 logger.info(f'looking for {filename}')
168 extension = os_path.splitext(filename)[1] 168 extension = os_path.splitext(filename)[1]
169 if extension == '.yml' or extension == '.yaml' or self.galaxy_flag and extension == '.dat': 169 if extension == '.yml' or extension == '.yaml' or self.galaxy_flag and extension == '.dat':
170 with open(filename, 'r') as f: 170 with open(filename, 'r') as f:
171 config = safe_load(f) 171 config = safe_load(f)
172 # if len(config) > 1: 172 # if len(config) > 1: