# HG changeset patch # User rnateam # Date 1500357490 14400 # Node ID 3797f1db3292be8f99c8eb8dba39dfc2c013c874 # Parent e3db4220a53e51ef7db7c7b081c7e256da04ca3c planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 746497a64b955f6b9afc1944d1c1d8d877e53267 diff -r e3db4220a53e -r 3797f1db3292 test-data/rnaalifold_input1.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaalifold_input1.fa Tue Jul 18 01:58:10 2017 -0400 @@ -0,0 +1,4 @@ +>Anolis_carolinensis_chrUn_GL34 +TGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTAGTGGGATCGATGCCCACATTCTCCA +>Anolis_carolinensis_chrUn_GL35 +GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATTGATGCCCGCATTCTCCA diff -r e3db4220a53e -r 3797f1db3292 test-data/rnaalifold_input1.stk --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaalifold_input1.stk Tue Jul 18 01:58:10 2017 -0400 @@ -0,0 +1,5 @@ +# STOCKHOLM 1.0 +#=GF SQ 2 +Anolis_carolinensis_chrUn_GL34 TGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTAGTGGGATCGATGCCCACATTCTCCA +Anolis_carolinensis_chrUn_GL35 GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATTGATGCCCGCATTCTCCA +// diff -r e3db4220a53e -r 3797f1db3292 test-data/rnaalifold_result_MEA.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaalifold_result_MEA.txt Tue Jul 18 01:58:10 2017 -0400 @@ -0,0 +1,6 @@ +GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 + -0.25) +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). [-26.77] +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). {-26.45 = -26.20 + -0.25 d=1.28} +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). {-26.45 = -26.20 + -0.25 MEA=70.93} + frequency of mfe structure in ensemble 0.773705; ensemble diversity 2.40 diff -r e3db4220a53e -r 3797f1db3292 test-data/rnaalifold_resultfa.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaalifold_resultfa.txt Tue Jul 18 01:58:10 2017 -0400 @@ -0,0 +1,2 @@ +GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 + -0.25) diff -r e3db4220a53e -r 3797f1db3292 test-data/rnaalifold_resultstk.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaalifold_resultstk.txt Tue Jul 18 01:58:10 2017 -0400 @@ -0,0 +1,2 @@ +GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA +(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 + -0.25)