Mercurial > repos > rnateam > vienna_rna

comparison rnaduplex.xml @ 2:2c5a9f01ba08 draft default tip

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author rnateam
date Mon, 09 Feb 2015 13:18:14 -0500
parents 031ad3250176
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1:b82c46050674 2:2c5a9f01ba08
49 </inputs> 49 </inputs>
50 <outputs> 50 <outputs>
51 <data format="txt" name="tabularFile"/> 51 <data format="txt" name="tabularFile"/>
52 </outputs> 52 </outputs>
53 <tests> 53 <tests>
54 <test>
55 <param name="input" value="rnaduplex_input1.fa"/>
56 <output name="out_file" file="rnaduplex_result1.txt"/>
57 </test>
54 </tests> 58 </tests>
55 <help> 59 <help>
56 <![CDATA[ 60 <![CDATA[
57 **RNAduplex** 61 **RNAduplex**
58 RNA duplex reads two RNA sequences and computes optimal and suboptimal secondary structures for their hybridization. The calculation is simplified by allowing only inter−molecular base pairs, for the general case use RNAcofold. The computed optimal and suboptimal structure are written to stdout, one structure per line. Suboptimal structures are computed with energy in a certain range of the optimum (kcal/mol). Default is calculation of mfe structure only. 62 RNA duplex reads two RNA sequences and computes optimal and suboptimal secondary structures for their hybridization. The calculation is simplified by allowing only inter−molecular base pairs, for the general case use RNAcofold. The computed optimal and suboptimal structure are written to stdout, one structure per line. Suboptimal structures are computed with energy in a certain range of the optimum (kcal/mol). Default is calculation of mfe structure only.