Mercurial > repos > rnateam > test_flexbar_binary_install

comparison tool_dependencies.xml @ 2:807fe267f74d draft default tip

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author rnateam
date Thu, 17 Sep 2015 06:06:18 -0400
parents d6d349ccd3ca
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1:d6d349ccd3ca 2:807fe267f74d
99 -g, --removal-tags 99 -g, --removal-tags
100 Tag reads that are subject to adapter or barcode removal. 100 Tag reads that are subject to adapter or barcode removal.
101 101
102 Trim-end modes: 102 Trim-end modes:
103 ANY: longer side of read remains after removal of overlap 103 ANY: longer side of read remains after removal of overlap
104 LEFT: right side remains after removal, align <= read end 104 LEFT: right side remains after removal, align &lt;= read end
105 RIGHT: left part remains after removal, align >= read start 105 RIGHT: left part remains after removal, align &gt;= read start
106 LEFT_TAIL: consider first n bases of reads in alignment 106 LEFT_TAIL: consider first n bases of reads in alignment
107 RIGHT_TAIL: use only last n bases, see tail-length options 107 RIGHT_TAIL: use only last n bases, see tail-length options
108 108
109 EXAMPLES 109 EXAMPLES
110 flexbar -r reads.fq -f i1.8 -t target -b brc.fa -a adap.fa 110 flexbar -r reads.fq -f i1.8 -t target -b brc.fa -a adap.fa