Mercurial > repos > rnateam > splitfasta
comparison splitFasta.py @ 0:f6d6b62540f8 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 03f3cc2000e6ce876a3cb44c55c3fe878a2e7ce3-dirty
| author | rnateam |
|---|---|
| date | Fri, 16 Oct 2015 16:13:08 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:f6d6b62540f8 |
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| 1 #!/usr/bin/env python | |
| 2 import os | |
| 3 import sys | |
| 4 from Bio import SeqIO | |
| 5 | |
| 6 if __name__ == "__main__": | |
| 7 inpath = sys.argv[1] | |
| 8 os.mkdir('splits') | |
| 9 with open(inpath, 'r') as handle: | |
| 10 for record in SeqIO.parse(handle, 'fasta'): | |
| 11 header = os.path.join('splits', record.id + '.fasta') | |
| 12 with open(header, 'w') as handle2: | |
| 13 SeqIO.write([record], handle2, 'fasta') |