Mercurial > repos > rnateam > sortmerna
view tool-data/rRNA_databases.loc.sample @ 1:dd73a3422870 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 8f8692e83217a072a3ed928469621f1f606ab28a-dirty
| author | rnateam |
|---|---|
| date | Tue, 04 Aug 2015 04:17:05 -0400 |
| parents | e18696d1bc0e |
| children |
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#This is a sample file distributed with Galaxy that is used to define a #list of public ribosomal databases, using three columns tab separated #(longer whitespace are TAB characters): # #<unique_id> <database_caption> <base_name_path> # #It is important that the actual database name does not have a space in it, #and that the first tab that appears in the line is right before the path. # #So, for example, if your database is rfam-5.8s and the path to your base name #is /data/rRNA_databases/rfam-5.8s, then the rRNA_databases.loc entry would look like this: # #rfam-5.8s Rfam 5.8S eukarya /data/rRNA_databases/rfam-5.8s # #Since SortMeRNA comes bundled with eight ribosomal databases, which are ready #for use after the tool installation, this sample file is in fact an actual file #to save the user the trouble of setting it. # rfam-5.8s-id98 Rfam 5.8S eukarya $SORTMERNADIR/rRNA_databases/rfam-5.8s-database-id98.fasta rfam-5s-id98 Rfam 5S archaea/bacteria $SORTMERNADIR/rRNA_databases/rfam-5s-database-id98.fasta silva-arc-16s-id95 SILVA 16S archaea $SORTMERNADIR/rRNA_databases/silva-arc-16s-id95.fasta silva-arc-23s-id98 SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-arc-23s-id98.fasta silva-bac-16s-id90 SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-16s-id90.fasta silva-bac-23s-id98 SILVA 23S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-23s-id98.fasta silva-euk-18s-id95 SILVA 18S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-18s-id95.fasta silva-euk-28s-id98 SILVA 28S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-28s-id98.fasta