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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
author rnateam
date Wed, 20 Mar 2019 03:00:33 -0400
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67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
rnateam
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1 Sat Sep 23 09:30:45 2017
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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3 Command: sortmerna --ref /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat,dataset_2 --aligned aligned --reads /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat --log --fastx -e 1.0 --match 2 --mismatch -3 --gap_open 5 --gap_ext 2 -N -3 -a 1
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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4 Process pid = 14406
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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5 Parameters summary:
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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6 Index: dataset_2
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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7 Seed length = 18
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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8 Pass 1 = 18, Pass 2 = 9, Pass 3 = 3
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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9 Gumbel lambda = 0.605605
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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10 Gumbel K = 0.332977
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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11 Minimal SW score based on E-value = 17
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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12 Number of seeds = 2
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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13 Edges = 4 (as integer)
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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14 SW match = 2
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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15 SW mismatch = -3
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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16 SW gap open penalty = 5
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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17 SW gap extend penalty = 2
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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18 SW ambiguous nucleotide = -3
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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19 SQ tags are not output
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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20 Number of threads = 1 (OpenMP is not supported with your current C++ compiler).
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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21 Reads file = /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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23 Results:
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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24 Total reads = 1
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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25 Total reads passing E-value threshold = 1 (100.00%)
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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26 Total reads failing E-value threshold = 0 (0.00%)
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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27 Minimum read length = 89
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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28 Maximum read length = 89
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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29 Mean read length = 89
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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30 By database:
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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31 /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat 100.00%
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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33 Sat Sep 23 09:30:45 2017
67a87a218aa4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
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