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diff readme.rst @ 0:bade631353d2 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ commit 9a59864f0bfb9937309d2c18b8cf3715c8067808
author rnateam
date Wed, 30 Nov 2016 16:44:53 -0500
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+Important notes
+----------------
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+- At least 2 cores should be used for running ``ribotaper part 3: ribosome profiling``,  therefore please configure **job_conf.xml** accordingly.
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+- We ran the RiboTaper analysis on an SGE cluster, using 7 cores and h_vmem 8G. For each dataset, the complete RiboTaper workflow (from the bam files to final results) took ~ 1 day.
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+- The current RiboTaper framework is not designed to identify and quantify ORFs on different transcripts. This means the transcript annotation is crucial.
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+- Be careful about using scaffolds, both in the genome and GTF files, which may slow the whole pipeline.