Mercurial > repos > rnateam > remurna
comparison create_input_file.py @ 0:01f42efba177 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/remurna commit 6e51a331dbeab2786d8df5fd379ae3a63eb61d83
| author | rnateam |
|---|---|
| date | Tue, 13 Dec 2016 11:47:56 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:01f42efba177 |
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| 1 import sys | |
| 2 import os | |
| 3 wild_fa = sys.argv[1] | |
| 4 snp_tags = sys.argv[2] | |
| 5 outfile = sys.argv[3] | |
| 6 # Write RNA sequence and SNP tags to a outfile | |
| 7 out = open(outfile,'w') | |
| 8 with open (wild_fa) as in_fa_handle: | |
| 9 for line in in_fa_handle: | |
| 10 out.write(line) | |
| 11 with open (snp_tags) as in_snp_handle: | |
| 12 out.write('*'+in_snp_handle.readline()) | |
| 13 out.close() |