Mercurial > repos > rnateam > rcas

comparison readme.rst @ 1:211a1f8c96df draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
author rnateam
date Thu, 21 Jun 2018 14:21:11 -0400
parents 0006f650cec5
children
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0:0006f650cec5 1:211a1f8c96df
1 Important notes 1 Important notes
2 ---------------- 2 ----------------
3 3
4 - the dependencies of the tool are handled by the conda dependency resolver 4 - the dependencies of the tool are handled by the conda dependency resolver
5 5
6 - to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults 6 - to install the dependencies, the galaxy administrator needs to enable the conda channels - bioconda, r, conda-forge, defaults
7 7
8 - by default, the conda installation includes hg19 8 - by default, the conda installation includes hg19
9 9
10 - to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda 10 - to enable analysis for hg38, mm9, mm10, ce10, or dm3, the administrator needs to separately install the relevant packages from the bioconda channel
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12 - bioconductor-bsgenome.hsapiens.ucsc.hg38
13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
14 - bioconductor-bsgenome.mmusculus.ucsc.mm10
15 - bioconductor-bsgenome.celegans.ucsc.ce10
11 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3 16 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3
12 - bioconductor-bsgenome.celegans.ucsc.ce10
13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
14 - bioconductor-org.mm.eg.db 17 - bioconductor-org.mm.eg.db
15 - bioconductor-org.ce.eg.db 18 - bioconductor-org.ce.eg.db
16 - bioconductor-org.dm.eg.db 19 - bioconductor-org.dm.eg.db
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