Mercurial > repos > rnateam > package_bctools_0_1

comparison tool_dependencies.xml @ 1:c9237b21b87f draft default tip

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author rnateam
date Thu, 22 Oct 2015 09:48:46 -0400
parents a286da13c60b
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0:a286da13c60b 1:c9237b21b87f
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bctools" version="0.1.0"> 3 <package name="bctools" version="0.1.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <actions> 6 <actions>
7 <action target_filename="bctools-0.1.0-alpha.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha.tar.gz</action> 7 <action target_filename="bctools-0.1.0-alpha1.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz</action>
8 <action type="set_environment_for_install"> 8 <action type="set_environment_for_install">
9 <repository changeset_revision="f8d72690eeae" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu"> 9 <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu">
10 <package name="biopython" version="1.65" /> 10 <package name="biopython" version="1.65" />
11 </repository> 11 </repository>
12 <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc"> 12 <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc">
13 <package name="pandas" version="0.16" /> 13 <package name="pandas" version="0.16" />
14 </repository> --> 14 </repository> -->
19 <package name="pybedtools" version="0.6.9" /> 19 <package name="pybedtools" version="0.6.9" />
20 </repository> --> 20 </repository> -->
21 <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 21 <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
22 <package name="pybedtools" version="0.6.6" /> 22 <package name="pybedtools" version="0.6.6" />
23 </repository> 23 </repository>
24
25 </action> 24 </action>
26 <action type="shell_command"> 25 <action type="shell_command">
27 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 26 python setup.py install --install-scripts $INSTALL_DIR
28 python setup.py install --install-lib $INSTALL_DIR/lib/python
29 </action> 27 </action>
30 <action type="set_environment"> 28 <action type="set_environment">
31 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
32 <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> 29 <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
33 </action> 30 </action>
34 </actions> 31 </actions>
35 </actions_group> 32 </actions_group>
36 </install> 33 </install>