Mercurial > repos > rnateam > mea
changeset 3:8c457c7a7bd7 draft
planemo upload commit 9099c0a9ff5f7f3d9407e2ec3598957e02850d88-dirty
| author | rnateam |
|---|---|
| date | Wed, 01 Jul 2015 10:41:03 -0400 |
| parents | 34fc6f78ed7c |
| children | 00e0ba24886a |
| files | mea.xml |
| diffstat | 1 files changed, 8 insertions(+), 9 deletions(-) [+] |
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--- a/mea.xml Wed Jul 01 10:13:10 2015 -0400 +++ b/mea.xml Wed Jul 01 10:41:03 2015 -0400 @@ -11,20 +11,19 @@ <exit_code range="1:" /> </stdio> - <command><![CDATA[ - mea + <command><![CDATA[mea #if str($mode.mode_selector) == "predict" $mode.dotplot + --alpha $mode.alpha + --beta $mode.beta + --gamma $mode.gamma + --delta $mode.delta #else --structure `cat $mode.structure` #end if #if str($reference) != "" --reference `cat $reference` #end if - --alpha $mode.alpha - --beta $mode.beta - --gamma $mode.gamma - --delta $mode.delta $slide_rule $conflict_rule > $stdout @@ -40,8 +39,8 @@ <param name="dotplot" type="data" format="rna_eps" label="Dotplot" optional="false" help="Dotplot file (RNA base pair probabilities)"/> <param name="alpha" label="Alpha" type="float" - optional="false" value="0.012" - help="Slope of base pair distance penalty"/> + optional="false" value="0.012" + help="Slope of base pair distance penalty"/> <param name="beta" label="Beta" type="float" optional="false" value="315" help="Turning point of base pair distance penalty" /> @@ -58,7 +57,7 @@ </when> </conditional> - <param name="reference" format="txt" type="data" label="Reference" /> + <param name="reference" optional="true" format="txt" type="data" label="Reference" /> <param name="slide_rule" label="Slide Rule" type="boolean" optional="false"