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comparison mea.xml @ 4:00e0ba24886a draft

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planemo upload commit 9099c0a9ff5f7f3d9407e2ec3598957e02850d88-dirty
author rnateam
date Wed, 01 Jul 2015 10:50:29 -0400
parents 8c457c7a7bd7
children 12a975bbf94c
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3:8c457c7a7bd7 4:00e0ba24886a
1 <tool id="mea" name="MEA" version="0.6.4.0"> 1 <tool id="mea" name="MEA" version="0.6.4.1">
2 <description>Predict maximum expected accuracy secondary structures 2 <description>Predict maximum expected accuracy secondary structures
3 of RNAs and compare RNA secondary structures</description> 3 of RNAs and compare RNA secondary structures</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="2.22.6" >gengetopt</requirement> 6 <requirement type="package" version="2.22.6" >gengetopt</requirement>
19 --gamma $mode.gamma 19 --gamma $mode.gamma
20 --delta $mode.delta 20 --delta $mode.delta
21 #else 21 #else
22 --structure `cat $mode.structure` 22 --structure `cat $mode.structure`
23 #end if 23 #end if
24 #if str($reference) != "" 24 #if $mode.compare == "compare"
25 --reference `cat $reference` 25 --reference `cat $reference`
26 $slide_rule
27 $conflict_rule
26 #end if 28 #end if
27 $slide_rule
28 $conflict_rule
29 > $stdout 29 > $stdout
30 ]]></command> 30 ]]></command>
31 31
32 <inputs> 32 <inputs>
33 <conditional name="mode"> 33 <conditional name="mode">