Mercurial > repos > rnateam > mafft

diff mafft.xml @ 5:dd4a533a0e3c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit fc3727b1b39cd5654a523d03e0df2b9ac87ddcda
author rnateam
date Tue, 20 Sep 2016 09:25:46 -0400
parents c9affca9656a
children e4a0bd9ea48c
line wrap: on
line diff
--- a/mafft.xml	Tue Feb 23 07:28:48 2016 -0500
+++ b/mafft.xml	Tue Sep 20 09:25:46 2016 -0400
@@ -16,7 +16,6 @@
     <![CDATA[
         #if $cond_flavour.flavourType != 'custom'
             $cond_flavour.flavourType
-            
         #elif $cond_flavour.flavourType == 'custom'
             ### full parameter options
             mafft
@@ -24,10 +23,10 @@
             --retree $cond_flavour.retree
             --maxiterate $cond_flavour.iterations
         #end if
-        
+
         ## specify threads to use
         --thread \${GALAXY_SLOTS:-1}
-      
+
         $datatype
         --ep $ep
         --op $op
@@ -38,12 +37,12 @@
         #elif $matrix_condition.matrix == "PAM"
            --jtt ${matrix_condition.PAM}
         #end if
-        
+
         $reorder
-        $getTree    
+        $getTree
         $outputFormat
         $inputSequences > $outputAlignment;
-        
+
         #if $getTree == "--treeout"
             mv ${inputSequences}.tree $outputTree;
         #end if