Mercurial > repos > rnateam > graphprot_predict_profile
diff graphprot_predict_wrapper.py @ 2:4cebb3439e1a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit afbe0da7a518d6fc60ea066917b1e567c8c42391"
| author | bgruening |
|---|---|
| date | Mon, 27 Jan 2020 23:36:37 +0000 |
| parents | adcc4c457c3c |
| children | 9a83a84a25a7 |
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--- a/graphprot_predict_wrapper.py Wed Jan 22 15:14:12 2020 +0000 +++ b/graphprot_predict_wrapper.py Mon Jan 27 23:36:37 2020 +0000 @@ -186,11 +186,11 @@ # Read in FASTA sequences to check for uppercase sequences. seqs_dic = gplib.read_fasta_into_dic(args.in_fa) c_uc_nt = gplib.seqs_dic_count_uc_nts(seqs_dic) - assert c_uc_nt, "no uppercase nucleotides in input .fa sequences. Please change sequences to uppercase (keep in mind GraphProt only scores uppercase regions (according to its viewpoint concept))" + assert c_uc_nt, "no uppercase nucleotides in input .fa sequences. Please change sequences to uppercase (keep in mind GraphProt only scores uppercase regions (according to its viewpoint concept)" if not args.ws_pred: # Check for lowercase sequences. c_lc_nt = gplib.seqs_dic_count_lc_nts(seqs_dic) - assert not c_lc_nt, "lowercase nucleotides not allowed in profile predictions, since GraphProt only scores uppercase regions (according to its viewpoint concept))" + assert not c_lc_nt, "lowercase nucleotides in input .fa not allowed in profile predictions, since GraphProt only scores uppercase regions (according to its viewpoint concept)" # Check .bed. if args.genomic_sites_bed: # An array of checks, marvelous.