Mercurial > repos > rnateam > graphprot_predict_profile

comparison graphprot_train_predict.xml @ 2:4cebb3439e1a draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit afbe0da7a518d6fc60ea066917b1e567c8c42391"
author bgruening
date Mon, 27 Jan 2020 23:36:37 +0000
parents adcc4c457c3c
children 58ebf089377e
comparison
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1:adcc4c457c3c 2:4cebb3439e1a
152 <data name="seq_motif_png_out_file" format="png" from_work_dir="GraphProt.sequence_motif.png" label="${tool.name} on ${on_string}: GraphProt sequence motif png file"> 152 <data name="seq_motif_png_out_file" format="png" from_work_dir="GraphProt.sequence_motif.png" label="${tool.name} on ${on_string}: GraphProt sequence motif png file">
153 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter> 153 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter>
154 </data> 154 </data>
155 155
156 <data name="str_motif_out_file" format="txt" from_work_dir="GraphProt.structure_motif" label="${tool.name} on ${on_string}: GraphProt structure motif text file"> 156 <data name="str_motif_out_file" format="txt" from_work_dir="GraphProt.structure_motif" label="${tool.name} on ${on_string}: GraphProt structure motif text file">
157 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"]</filter> 157 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter>
158 </data> 158 </data>
159 159
160 <data name="str_motif_png_out_file" format="png" from_work_dir="GraphProt.structure_motif.png" label="${tool.name} on ${on_string}: GraphProt structure motif png file"> 160 <data name="str_motif_png_out_file" format="png" from_work_dir="GraphProt.structure_motif.png" label="${tool.name} on ${on_string}: GraphProt structure motif png file">
161 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter> 161 <filter>action_type["action_type_selector"] == "train" and not action_type["training_options"]["disable_motifs"] and action_type["train_str_model"]</filter>
162 </data> 162 </data>
191 191
192 </outputs> 192 </outputs>
193 193
194 <tests> 194 <tests>
195 195
196 <test expect_num_outputs="5"> 196 <test expect_num_outputs="4">
197 <param name="action_type_selector" value="train"/> 197 <param name="action_type_selector" value="train"/>
198 <param name="pos_fasta_file" value="test_positives.train.fa" ftype="fasta"/> 198 <param name="pos_fasta_file" value="test_positives.train.fa" ftype="fasta"/>
199 <param name="neg_fasta_file" value="test_negatives.train.fa" ftype="fasta"/> 199 <param name="neg_fasta_file" value="test_negatives.train.fa" ftype="fasta"/>
200 <param name="hpo_mode_type_selector" value="supply"/> 200 <param name="hpo_mode_type_selector" value="supply"/>
201 <param name="pos_parop_fasta" value="test_positives.parop.fa" ftype="fasta"/> 201 <param name="pos_parop_fasta" value="test_positives.parop.fa" ftype="fasta"/>