Mercurial > repos > rnateam > graphclust_postprocessing

comparison evaluation.py @ 4:dbcea781900e draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923
author rnateam
date Mon, 13 Mar 2017 17:54:32 -0400
parents a8fde40f00fc
children 911e58500508
comparison
equal deleted inserted replaced
3:a8fde40f00fc 4:dbcea781900e
18 numberOfClusters = 0 18 numberOfClusters = 0
19 for singleFile in sorted(cluster_seqs_stats_files): 19 for singleFile in sorted(cluster_seqs_stats_files):
20 numberOfClusters += 1 20 numberOfClusters += 1
21 with open(singleFile, "r") as f: 21 with open(singleFile, "r") as f:
22 for line in f.readlines(): 22 for line in f.readlines():
23 uniqueId = line.split()[7] 23 uniqueId = line.split()[8]
24 clustNum = line.split()[1] 24 clustNum = line.split()[2]
25 rnaClass, sep, tail = uniqueId.partition("_") 25 rnaClass, sep, tail = uniqueId.partition("_")
26 listOfClasses.append(rnaClass) 26 listOfClasses.append(rnaClass)
27 listOfClusters.append(clustNum) 27 listOfClusters.append(clustNum)
28 with open(dataNames, "r") as names: 28 with open(dataNames, "r") as names:
29 for line in names.readlines(): 29 for line in names.readlines():