Mercurial > repos > rnateam > graphclust_postprocessing

comparison glob_report.xml @ 8:75d8e05db621 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e
author rnateam
date Mon, 20 Nov 2017 04:59:12 -0500
parents 911e58500508
children 08a3e826ccd7
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7:911e58500508 8:75d8e05db621
1 <tool id="glob_report" name="cluster_collection_report" version="0.1"> 1 <tool id="glob_report" name="cluster_collection_report" version="0.3" >
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.2.0">graphclust-wrappers</requirement> 3 <requirement type="package" version="0.5.2">graphclust-wrappers</requirement>
4 <requirement type="package" version='0.5'>perl-array-utils</requirement> 4 <requirement type="package" version='0.5'>perl-array-utils</requirement>
5 <requirement type="package" version='0.18.1'>scikit-learn</requirement> 5 <requirement type="package" version='0.18.1'>scikit-learn</requirement>
6 <requirement type="package" version='1.8.10'>locarna</requirement> 6 <requirement type="package" version='1.8.10'>locarna</requirement>
7 <requirement type="package" version='2.1'>rnaz</requirement> 7 <requirement type="package" version='2.1'>rnaz</requirement>
8 <requirement type="package" version="1.1">infernal</requirement> 8 <requirement type="package" version="1.1.2">infernal</requirement>
9 <requirement type="package" version='2.2.10'>viennarna</requirement> 9 <requirement type="package" version='2.2.10'>viennarna</requirement>
10 <requirement type="package" version='1.3.23'>graphicsmagick</requirement> 10 <requirement type="package" version='1.3.26'>graphicsmagick</requirement>
11 <requirement type="package" version='0.3.1'>rscape</requirement> 11 <requirement type="package" version='0.6.1'>rscape</requirement>
12 12 <requirement type="package" version='6.0'>unzip</requirement>
13
13 </requirements> 14 </requirements>
14 <stdio> 15 <stdio>
15 <exit_code range="1:" /> 16 <exit_code range="1:" />
16 </stdio> 17 </stdio>
17 <command> 18 <command>
34 #for $mods in $model_tree_files: 35 #for $mods in $model_tree_files:
35 ###set $inputFilesTrees += str($mods.element_identifier)+',' 36 ###set $inputFilesTrees += str($mods.element_identifier)+','
36 ln -f -s '$mods' ./MODEL/$mods.element_identifier && 37 ln -f -s '$mods' ./MODEL/$mods.element_identifier &&
37 #end for 38 #end for
38 #set $inputFilesTrees = $inputFilesTrees[:-1] 39 #set $inputFilesTrees = $inputFilesTrees[:-1]
40
41
39 'glob_res.pl' 42 'glob_res.pl'
40 ##'$inputFiles' 43 ##'$inputFiles'
41 $merge_cluster_ol 44 $merge_cluster_ol
42 $merge_overlap 45 $merge_overlap
43 $min_cluster_size 46 $min_cluster_size
69 #end if 72 #end if
70 #end if 73 #end if
71 74
72 && 75 &&
73 python '$__tool_directory__/evaluation.py' 76 python '$__tool_directory__/evaluation.py'
77
74 #if $cdhit: 78 #if $cdhit:
75 && 79 &&
76 python '$__tool_directory__/addCdhitseqs.py' '$cdhit' 80 python '$__tool_directory__/addCdhitseqs.py' '$cdhit'
77 #end if 81 #end if
78 ]]> 82 ]]>