Mercurial > repos > rnateam > graphclust_fasta_to_gspan

comparison fasta2shrep_gspan.xml @ 3:7c38d9ca2fa6 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/GSPAN commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n'
author rnateam
date Fri, 17 Mar 2017 08:23:47 -0400
parents 162c087399ad
children 07e36eab4f0c
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2:162c087399ad 3:7c38d9ca2fa6
1 <tool id="gspan" name="fasta_to_gspan" version="0.1"> 1 <tool id="gspan" name="fasta_to_gspan" version="0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.1.10">graphclust-wrappers</requirement> 3 <requirement type="package" version="0.1.11">graphclust-wrappers</requirement>
4 <requirement type="package" version="2.1.6">rnashapes</requirement> 4 <requirement type="package" version="2.1.6">rnashapes</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" /> 7 <exit_code range="1:" />
8 </stdio> 8 </stdio>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 fasta2shrep_gspan.pl 11 fasta2shrep_gspan.pl
12 --fasta '$dataFasta' 12 --fasta '$dataFasta'
13 $i_crop_unpaired_ends 13 $i_crop_unpaired_ends
14 $i_abstr 14 $i_abstr
15 $i_stacks 15 $i_stacks
16 -t '3=0,5=80' 16 -t '3=0,5=80'