Mercurial > repos > rnateam > dorina

comparison data_source.py @ 1:32c27a1d81a4 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dorina/ commit d720bfabe099baad94dfe54442cb6a4dd023524a
author rnateam
date Fri, 07 Oct 2016 09:43:28 -0400
parents f388dcb96df8
children
comparison
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0:f388dcb96df8 1:32c27a1d81a4
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 # Retrieves data from external data source applications and stores in a dataset file. 2 # Retrieves data from external data source applications and stores in a dataset file.
3 # Data source application parameters are temporarily stored in the dataset file. 3 # Data source application parameters are temporarily stored in the dataset file.
4 import socket, urllib, sys, os 4 import socket, urllib, sys, os
5 from galaxy import eggs #eggs needs to be imported so that galaxy.util can find docutils egg... 5 from galaxy import eggs #eggs needs to be imported so that galaxy.util can find docutils egg...
6 from galaxy.util.json import loads, dumps
7 from galaxy.util import get_charset_from_http_headers 6 from galaxy.util import get_charset_from_http_headers
8 import galaxy.model # need to import model before sniff to resolve a circular import dependency 7 import galaxy.model # need to import model before sniff to resolve a circular import dependency
9 from galaxy.datatypes import sniff 8 from galaxy.datatypes import sniff
10 from galaxy.datatypes.registry import Registry 9 from galaxy.datatypes.registry import Registry
11 from galaxy.jobs import TOOL_PROVIDED_JOB_METADATA_FILE 10 from galaxy.jobs import TOOL_PROVIDED_JOB_METADATA_FILE
11 from json import loads, dumps
12 12
13 assert sys.version_info[:2] >= ( 2, 4 ) 13 assert sys.version_info[:2] >= ( 2, 4 )
14 14
15 def stop_err( msg ): 15 def stop_err( msg ):
16 sys.stderr.write( msg ) 16 sys.stderr.write( msg )