Mercurial > repos > rnateam > dorina
comparison data_source.py @ 1:32c27a1d81a4 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dorina/ commit d720bfabe099baad94dfe54442cb6a4dd023524a
author | rnateam |
---|---|
date | Fri, 07 Oct 2016 09:43:28 -0400 |
parents | f388dcb96df8 |
children |
comparison
equal
deleted
inserted
replaced
0:f388dcb96df8 | 1:32c27a1d81a4 |
---|---|
1 #!/usr/bin/env python | 1 #!/usr/bin/env python |
2 # Retrieves data from external data source applications and stores in a dataset file. | 2 # Retrieves data from external data source applications and stores in a dataset file. |
3 # Data source application parameters are temporarily stored in the dataset file. | 3 # Data source application parameters are temporarily stored in the dataset file. |
4 import socket, urllib, sys, os | 4 import socket, urllib, sys, os |
5 from galaxy import eggs #eggs needs to be imported so that galaxy.util can find docutils egg... | 5 from galaxy import eggs #eggs needs to be imported so that galaxy.util can find docutils egg... |
6 from galaxy.util.json import loads, dumps | |
7 from galaxy.util import get_charset_from_http_headers | 6 from galaxy.util import get_charset_from_http_headers |
8 import galaxy.model # need to import model before sniff to resolve a circular import dependency | 7 import galaxy.model # need to import model before sniff to resolve a circular import dependency |
9 from galaxy.datatypes import sniff | 8 from galaxy.datatypes import sniff |
10 from galaxy.datatypes.registry import Registry | 9 from galaxy.datatypes.registry import Registry |
11 from galaxy.jobs import TOOL_PROVIDED_JOB_METADATA_FILE | 10 from galaxy.jobs import TOOL_PROVIDED_JOB_METADATA_FILE |
11 from json import loads, dumps | |
12 | 12 |
13 assert sys.version_info[:2] >= ( 2, 4 ) | 13 assert sys.version_info[:2] >= ( 2, 4 ) |
14 | 14 |
15 def stop_err( msg ): | 15 def stop_err( msg ): |
16 sys.stderr.write( msg ) | 16 sys.stderr.write( msg ) |