Mercurial > repos > rnateam > chipseeker

diff chipseeker.xml @ 7:e23396bf7bdb draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/chipseeker commit d30c91c3b4f71ec45b72976f7c2f08ea7df1e376-dirty"
author rnateam
date Fri, 27 Aug 2021 10:50:18 +0000
parents 7da70e9119b2
children
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--- a/chipseeker.xml	Sat Apr 27 11:03:29 2019 -0400
+++ b/chipseeker.xml	Fri Aug 27 10:50:18 2021 +0000
@@ -1,8 +1,8 @@
-<tool id="chipseeker" name="ChIPseeker" version="1.18.0+galaxy1">
+<tool id="chipseeker" name="ChIPseeker" version="1.28.3+galaxy0">
     <description>for ChIP peak annotation and visualization</description>
     <requirements>
-        <requirement type="package" version="1.18.0">bioconductor-chipseeker</requirement>
-        <requirement type="package" version="1.6.1">r-optparse</requirement>
+        <requirement type="package" version="1.28.3">bioconductor-chipseeker</requirement>
+        <requirement type="package" version="1.6.6">r-optparse</requirement>
     </requirements>
     <version_command><![CDATA[
 echo $(R --version | grep version | grep -v GNU)", ChIPseeker version" $(R --vanilla --slave -e "library(ChIPseeker); cat(sessionInfo()\$otherPkgs\$ChIPseeker\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
@@ -117,12 +117,16 @@
             <param name="rdata" value="True"/>
             <output name="out_tab" ftype="interval" file="out.int" />
             <output name="out_plots" file="out.pdf" compare="sim_size"/>
-            <output name="out_rscript" >
+            <output name="out_rscript">
                 <assert_contents>
-                    <has_text_matching expression="peakAnno.*annotatePeak" />
+                    <has_text_matching expression="peak_anno.*annotatePeak" />
                 </assert_contents>
             </output>
-            <output name="out_rdata" file="out.rdata" compare="sim_size" />
+            <output name="out_rdata">
+                <assert_contents>
+                        <has_size value="160346" delta="300"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- Ensure built-in GTF works -->
         <test expect_num_outputs="2">