Mercurial > repos > rnateam > chipseeker
annotate tool-data/gene_sets.loc.sample @ 7:e23396bf7bdb draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/chipseeker commit d30c91c3b4f71ec45b72976f7c2f08ea7df1e376-dirty"
| author | rnateam |
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| date | Fri, 27 Aug 2021 10:50:18 +0000 |
| parents | 2019b4dd86a8 |
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| rev | line source |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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1 # This is a sample file distributed with featureCounts that enables it and other# tools to use gene/exon annotations in the GFF/GTF format. |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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2 # |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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3 # The gene_sets.loc file syntax is: |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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4 #<unique_build_id> <dbkey> <display_name> <path> |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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5 # |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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6 # Please ensure that the above fields are tab separated. |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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7 # |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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8 # In case you have TWO or MORE providers PER dbkey, the one mentioned |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
|
9 # first in the file, should have the "default" priority. |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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10 # |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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11 #Example: |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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12 # |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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13 #Homo_sapiens.GRCh38.90 hg38 GRCh38 (hg38) annotation from Ensembl, release 90 /depot/data2/galaxy/hg38/gene_sets/Homo_sapiens.GRCh38.90.gtf |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
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14 #Homo_sapiens.GRCh37.87 hg19 GRCh37 (hg19) annotation from Ensembl, release 87 /depot/data2/galaxy/hg19/gene_sets/Homo_sapiens.GRCh37.87.gtf |
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2019b4dd86a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff
changeset
|
15 |
