Mercurial > repos > rnateam > blockclust

comparison tool_dependencies.xml @ 5:49b72f1013b3 draft

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Uploaded
author rnateam
date Tue, 22 Oct 2013 10:15:09 -0400
parents 4882bc140680
children b77328c96ac9
comparison
equal deleted inserted replaced
4:4882bc140680 5:49b72f1013b3
9 <source>BlockClust</source> 9 <source>BlockClust</source>
10 <destination>$INSTALL_DIR/bin</destination> 10 <destination>$INSTALL_DIR/bin</destination>
11 </action> 11 </action>
12 <action type="move_file"> 12 <action type="move_file">
13 <source>BlockClustPipeLine.pl</source> 13 <source>BlockClustPipeLine.pl</source>
14 <destination>$INSTALL_DIR/bin</destination>
15 </action>
16 <action type="move_file">
17 <source>perf</source>
14 <destination>$INSTALL_DIR/bin</destination> 18 <destination>$INSTALL_DIR/bin</destination>
15 </action> 19 </action>
16 <action type="move_file"> 20 <action type="move_file">
17 <source>blockclust.config</source> 21 <source>blockclust.config</source>
18 <destination>$INSTALL_DIR/data/</destination> 22 <destination>$INSTALL_DIR/data/</destination>
30 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action> 34 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
31 <action type="set_environment"> 35 <action type="set_environment">
32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 36 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
33 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable> 37 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
34 </action> 38 </action>
39 <action type="setup_r_environment">
40 <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
41 <package name="R_3_0_1" version="3.0.1" />
42 </repository>
43 <repository changeset_revision="54195f1d4b0f" name="'package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
44 <package name="samtools" version="0.1.19 " />
45 </repository>
46 <r_package>http://cran.r-project.org/src/contrib/ggplot2_0.9.3.1.tar.gz</r_package>
47 <r_package>http://cran.r-project.org/src/contrib/ape_3.0-11.tar.gz</r_package>
48 </action>
49 <action type="set_environment">
50 <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
51 </action>
35 </actions> 52 </actions>
36 </install> 53 </install>
37 <readme> 54 <readme>
38 55
39 </readme> 56 </readme>