diff tool_dependencies.xml @ 0:2f9d4b518b03 draft

Uploaded
author rnateam
date Thu, 17 Oct 2013 04:33:30 -0400
parents
children ea55fb635c5a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 17 04:33:30 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <!-- blockbuster seems to have no version number, assuming a really small one -->
+    <package name="blockbuster" version="0.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>blockbuster.x</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
+        GCC is needed to compilte Blockbuster.
+        http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
+        </readme>
+    </package>
+</tool_dependency>