Mercurial > repos > rnateam > bctools

changeset 46:fd42c7f0ad4b draft

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Uploaded
author rnateam
date Fri, 18 Dec 2015 10:16:27 -0500
parents 0df572b4d644
children 77bb5e0bd5ad
files flexbar_dsc.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/flexbar_dsc.xml	Fri Dec 18 10:11:09 2015 -0500
+++ b/flexbar_dsc.xml	Fri Dec 18 10:16:27 2015 -0500
@@ -6,6 +6,7 @@
 <!--     * use paired-end dataset collection as output -->
 
 <!-- * currently only works for barcode splitting with paired-end reads -->
+<!-- * output is fixed to fastqsanger -->
 
 <tool id="flexbardsc" name="Flexbar DSC" version="2.5">
 
@@ -431,7 +432,7 @@
                    identifier in the nested collection and identifier_1 is either
                    forward or reverse (for instance samp1_forward.fq).
               -->
-            <discover_datasets pattern="FlexbarOutput_barcode_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" ext="reads.ext"/>
+            <discover_datasets pattern="FlexbarOutput_barcode_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" ext="fastqsanger"/>
         </collection>
     </outputs>