# HG changeset patch
# User rnateam
# Date 1455284452 18000
# Node ID b0d5cd8e4c6b6ff4775e8242dd5d419e67768474
# Parent  4bedd35bcdff6bd831a984ab049e3169dee17e57
fix requirements xml

diff -r 4bedd35bcdff -r b0d5cd8e4c6b convert_bc_to_binary_RY.xml
--- a/convert_bc_to_binary_RY.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/convert_bc_to_binary_RY.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,10 +1,8 @@
 <tool id="convert_bc_to_binary_RY.py" name="Create binary barcodes" version="0.1.0">
   <description>from regular barcodes.</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="1.66">biopython</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="1.66">biopython</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b coords2clnt.xml
--- a/coords2clnt.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/coords2clnt.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,10 +1,8 @@
 <tool id="coords2clnt.py" name="Get crosslinked nucleotides" version="0.1.0">
   <description>from full alignments</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="0.6.9">pybedtools</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="0.6.9">pybedtools</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b extract_aln_ends.xml
--- a/extract_aln_ends.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/extract_aln_ends.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,11 +1,9 @@
 <tool id="extract_aln_ends.py" name="Extract alignment ends." version="0.2.0">
   <description>from SAM or BAM.</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="0.6.9">pybedtools</requirement>
-          <requirement type="package" version="0.8.3">pysam</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="0.6.9">pybedtools</requirement>
+      <requirement type="package" version="0.8.3">pysam</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b extract_bcs.xml
--- a/extract_bcs.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/extract_bcs.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,10 +1,8 @@
 <tool id="extract_bcs.py" name="Extract barcodes" version="1.0.0">
   <description>using pattern.</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="1.66">biopython</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="1.66">biopython</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b merge_pcr_duplicates.xml
--- a/merge_pcr_duplicates.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/merge_pcr_duplicates.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,12 +1,10 @@
 <tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.2.0">
   <description>according to random barcode library.</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="4.1.0">gnu_awk</requirement>
-          <requirement type="package" version="8.22">gnu_coreutils</requirement>
-          <requirement type="package" version="1.0.6">datamash</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="4.1.0">gnu_awk</requirement>
+      <requirement type="package" version="8.22">gnu_coreutils</requirement>
+      <requirement type="package" version="1.0.6">datamash</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b remove_tail.xml
--- a/remove_tail.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/remove_tail.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,10 +1,8 @@
 <tool id="remove_tail.py" name="Remove 3'-end nts" version="0.1.0">
   <description>from FASTQ</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="1.66">biopython</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="1.66">biopython</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
diff -r 4bedd35bcdff -r b0d5cd8e4c6b rm_spurious_events.xml
--- a/rm_spurious_events.xml	Fri Feb 12 08:37:33 2016 -0500
+++ b/rm_spurious_events.xml	Fri Feb 12 08:40:52 2016 -0500
@@ -1,11 +1,9 @@
 <tool id="rm_spurious_events.py" name="Remove spurious" version="0.1.0">
   <description>crosslinking events</description>
-  <xml name="requirements">
-      <requirements>
-          <requirement type="package" version="8.22">gnu_coreutils</requirement>
-          <requirement type="package" version="5.18.1">perl</requirement>
-      </requirements>
-  </xml>
+  <requirements>
+      <requirement type="package" version="8.22">gnu_coreutils</requirement>
+      <requirement type="package" version="5.18.1">perl</requirement>
+  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>