Mercurial > repos > rnateam > bctools
diff remove_tail.xml @ 0:119fccb59597 draft
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author | rnateam |
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date | Thu, 22 Oct 2015 09:52:51 -0400 |
parents | |
children | bf5b606f1aa7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/remove_tail.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,43 @@ +<tool id="remove_tail.py" name="remove_tail.py" version="1.0"> + <description>Remove nts from 3'-end.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <expand macro="stdio" /> + <version_command>python remove_tail.py --version</version_command> + <command interpreter="python"><![CDATA[remove_tail.py +#if $positional_1 and $positional_1 is not None: +$positional_1 +#end if + +#if $positional_2 and $positional_2 is not None: +$positional_2 +#end if + +> $default]]></command> + <inputs> + <param area="false" label="Fastq file." name="positional_1" type="data" format="fastq"/> + <param label="Remove this many nts." name="positional_2" type="integer" value="0"/> + </inputs> + <outputs> + <data format="fastq" hidden="false" name="default"/> + </outputs> + <tests> + <test> + <param name="positional_1" value="readswithtail.fastq"/> + <param name="positional_2" value="7"/> + <output name="default" file="readswithtailremoved.fastq"/> + </test> + </tests> + <help><![CDATA[ +Remove a certain number of nucleotides from the 3'-tails of sequences in fastq format. + +Author: Daniel Maticzka +Copyright: 2015 +License: Apache +Email: maticzkd@informatik.uni-freiburg.de +Status: Testing +]]></help> + <expand macro="citations" /> +</tool>