diff remove_tail.xml @ 0:119fccb59597 draft

Uploaded
author rnateam
date Thu, 22 Oct 2015 09:52:51 -0400
parents
children bf5b606f1aa7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/remove_tail.xml	Thu Oct 22 09:52:51 2015 -0400
@@ -0,0 +1,43 @@
+<tool id="remove_tail.py" name="remove_tail.py" version="1.0">
+  <description>Remove nts from 3'-end.</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <expand macro="stdio" />
+  <version_command>python remove_tail.py --version</version_command>
+  <command interpreter="python"><![CDATA[remove_tail.py
+#if $positional_1 and $positional_1 is not None:
+$positional_1
+#end if
+
+#if $positional_2 and $positional_2 is not None:
+$positional_2
+#end if
+
+> $default]]></command>
+  <inputs>
+    <param area="false" label="Fastq file." name="positional_1" type="data" format="fastq"/>
+    <param label="Remove this many nts." name="positional_2" type="integer" value="0"/>
+  </inputs>
+  <outputs>
+    <data format="fastq" hidden="false" name="default"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="positional_1" value="readswithtail.fastq"/>
+      <param name="positional_2" value="7"/>
+      <output name="default" file="readswithtailremoved.fastq"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+Remove a certain number of nucleotides from the 3'-tails of sequences in fastq format.
+
+Author: Daniel Maticzka
+Copyright: 2015
+License: Apache
+Email: maticzkd@informatik.uni-freiburg.de
+Status: Testing
+]]></help>
+  <expand macro="citations" />
+</tool>