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comparison remove_tail.xml @ 2:de4ea3aa1090 draft

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author rnateam
date Thu, 22 Oct 2015 10:26:45 -0400
parents 119fccb59597
children bf5b606f1aa7
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1:ae0f58d3318f 2:de4ea3aa1090
1 <tool id="remove_tail.py" name="remove_tail.py" version="1.0">
2 <description>Remove nts from 3'-end.</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <version_command>python remove_tail.py --version</version_command>
9 <command interpreter="python"><![CDATA[remove_tail.py
10 #if $positional_1 and $positional_1 is not None:
11 $positional_1
12 #end if
13
14 #if $positional_2 and $positional_2 is not None:
15 $positional_2
16 #end if
17
18 > $default]]></command>
19 <inputs>
20 <param area="false" label="Fastq file." name="positional_1" type="data" format="fastq"/>
21 <param label="Remove this many nts." name="positional_2" type="integer" value="0"/>
22 </inputs>
23 <outputs>
24 <data format="fastq" hidden="false" name="default"/>
25 </outputs>
26 <tests>
27 <test>
28 <param name="positional_1" value="readswithtail.fastq"/>
29 <param name="positional_2" value="7"/>
30 <output name="default" file="readswithtailremoved.fastq"/>
31 </test>
32 </tests>
33 <help><![CDATA[
34 Remove a certain number of nucleotides from the 3'-tails of sequences in fastq format.
35
36 Author: Daniel Maticzka
37 Copyright: 2015
38 License: Apache
39 Email: maticzkd@informatik.uni-freiburg.de
40 Status: Testing
41 ]]></help>
42 <expand macro="citations" />
43 </tool>