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comparison flexbar_dsc.xml @ 31:7a1a5664a886 draft

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fix output is not collection
author rnateam
date Thu, 17 Dec 2015 11:37:41 -0500
parents 3239487fa9c5
children c53e1cc9ad35
comparison
equal deleted inserted replaced
30:3239487fa9c5 31:7a1a5664a886
419 <stdio> 419 <stdio>
420 <exit_code range="1:" level="fatal" description="Error!" /> 420 <exit_code range="1:" level="fatal" description="Error!" />
421 </stdio> 421 </stdio>
422 422
423 <outputs> 423 <outputs>
424 <data format="txt" name="output" metadata_source="reads"/>
424 <collection name="list_output" type="list:paired" label="Duplicate List"> 425 <collection name="list_output" type="list:paired" label="Duplicate List">
425 <!-- Use named regex group to grab pattern 426 <!-- Use named regex group to grab pattern
426 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list 427 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list
427 identifier in the nested collection and identifier_1 is either 428 identifier in the nested collection and identifier_1 is either
428 forward or reverse (for instance samp1_forward.fq). 429 forward or reverse (for instance samp1_forward.fq).
429 --> 430 -->
430 <data format="txt" name="output" metadata_source="reads"/> 431 <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
431 <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
432 </collection> 432 </collection>
433 </outputs> 433 </outputs>
434 434
435 435
436 <help> 436 <help>