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comparison extract_aln_ends.xml @ 55:4bedd35bcdff draft

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Move deps from macros to individual tools
author rnateam
date Fri, 12 Feb 2016 08:37:33 -0500
parents 0b9aab6aaebf
children b0d5cd8e4c6b
comparison
equal deleted inserted replaced
54:7a05b21c5629 55:4bedd35bcdff
1 <tool id="extract_aln_ends.py" name="Extract alignment ends." version="0.2.0"> 1 <tool id="extract_aln_ends.py" name="Extract alignment ends." version="0.2.0">
2 <description>from SAM or BAM.</description> 2 <description>from SAM or BAM.</description>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="0.6.9">pybedtools</requirement>
6 <requirement type="package" version="0.8.3">pysam</requirement>
7 </requirements>
8 </xml>
3 <macros> 9 <macros>
4 <import>macros.xml</import> 10 <import>macros.xml</import>
5 </macros> 11 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" /> 12 <expand macro="stdio" />
8 <version_command>python $__tool_directory__/extract_aln_ends.py --version</version_command> 13 <version_command>python $__tool_directory__/extract_aln_ends.py --version</version_command>
9 <command interpreter="python"><![CDATA[ 14 <command interpreter="python"><![CDATA[
10 extract_aln_ends.py 15 extract_aln_ends.py
11 #if $positional_1 and $positional_1 is not None: 16 #if $positional_1 and $positional_1 is not None: