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comparison convert_bc_to_binary_RY.xml @ 6:1bfc5a5de843 draft

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author rnateam
date Wed, 04 Nov 2015 07:18:06 -0500
parents 119fccb59597
children 17ef0e0dae68
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5:e841de88235c 6:1bfc5a5de843
1 <tool id="convert_bc_to_binary_RY.py" name="convert_bc_to_binary_RY.py" version="0.1.0"> 1 <tool id="convert_bc_to_binary_RY.py" name="Create binary barcodes" version="0.1.0">
2 <description>Convert to binary barcodes.</description> 2 <description>from regular barcodes.</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
23 <param name="positional_1" value="result.fa"/> 23 <param name="positional_1" value="result.fa"/>
24 <output name="default" file="converted_bcs.fa"/> 24 <output name="default" file="converted_bcs.fa"/>
25 </test> 25 </test>
26 </tests> 26 </tests>
27 <help><![CDATA[ 27 <help><![CDATA[
28 Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.
29 28
29 **What it does**
30
31 This tool converts standard nucleotides to IUPAC nucleotide codes used for binary barcodes.
30 A and G are converted to nucleotide code R. T, U and C are converted to Y. 32 A and G are converted to nucleotide code R. T, U and C are converted to Y.
31 33
32 Author: Daniel Maticzka 34 **Input**
33 Copyright: 2015 35
34 License: Apache 36 The input for this tool is a fasta file.
35 Email: maticzkd@informatik.uni-freiburg.de 37
36 Status: Testing 38 **Output**
39
40 This tool produces a single fasta file containing the converted barcodes.
41
42 ** References **
37 ]]></help> 43 ]]></help>
38 <expand macro="citations" /> 44 <expand macro="citations" />
39 </tool> 45 </tool>