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comparison merge_pcr_duplicates.xml @ 8:17ef0e0dae68 draft

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author rnateam
date Tue, 10 Nov 2015 09:13:44 -0500
parents 1bfc5a5de843
children b994884d5541
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7:bb59215dfd8f 8:17ef0e0dae68
36 Barcodes containing uncalled base 'N' are removed. 36 Barcodes containing uncalled base 'N' are removed.
37 37
38 Input:: 38 Input::
39 39
40 * bed6 file containing alignments with fastq read-id in name field 40 * bed6 file containing alignments with fastq read-id in name field
41 * fasta library with fastq read-id as sequence ids 41 * fastq library of random barcodes
42 42
43 Output:: 43 Output::
44 44
45 * bed6 file with random barcode in name field and number of PCR duplicates as score, sorted by fields chrom, start, stop, strand, name 45 * bed6 file with random barcode in name field and number of PCR duplicates as score, sorted by fields chrom, start, stop, strand, name
46 46