Mercurial > repos > rnateam > bctools
comparison tool_dependencies.xml @ 0:119fccb59597 draft
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| author | rnateam |
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| date | Thu, 22 Oct 2015 09:52:51 -0400 |
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| -1:000000000000 | 0:119fccb59597 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="bctools" version="0.1.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <actions> | |
| 7 <action target_filename="bctools-0.1.0-alpha1.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz</action> | |
| 8 <action type="set_environment_for_install"> | |
| 9 <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 10 <package name="biopython" version="1.65" /> | |
| 11 </repository> | |
| 12 <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc"> | |
| 13 <package name="pandas" version="0.16" /> | |
| 14 </repository> --> | |
| 15 <repository changeset_revision="045c4645abdf" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 16 <package name="pandas" version="0.14" /> | |
| 17 </repository> | |
| 18 <!-- <repository name="package_python_2_7_pybedtools_0_6_9" owner="iuc"> | |
| 19 <package name="pybedtools" version="0.6.9" /> | |
| 20 </repository> --> | |
| 21 <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 22 <package name="pybedtools" version="0.6.6" /> | |
| 23 </repository> | |
| 24 </action> | |
| 25 <action type="shell_command"> | |
| 26 python setup.py install --install-scripts $INSTALL_DIR | |
| 27 </action> | |
| 28 <action type="set_environment"> | |
| 29 <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> | |
| 30 </action> | |
| 31 </actions> | |
| 32 </actions_group> | |
| 33 </install> | |
| 34 <readme> | |
| 35 bctools - Set of tools for handling barcodes in NGS data. | |
| 36 https://github.com/tzk/bctools | |
| 37 </readme> | |
| 38 </package> | |
| 39 </tool_dependency> |