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comparison convert_bc_to_binary_RY.xml @ 0:119fccb59597 draft

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author rnateam
date Thu, 22 Oct 2015 09:52:51 -0400
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1 <tool id="convert_bc_to_binary_RY.py" name="convert_bc_to_binary_RY.py" version="0.1.0">
2 <description>Convert to binary barcodes.</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <version_command>python convert_bc_to_binary_RY.py --version</version_command>
9 <command interpreter="python"><![CDATA[
10 convert_bc_to_binary_RY.py
11 #if $positional_1 and $positional_1 is not None:
12 $positional_1
13 #end if
14 > $default]]></command>
15 <inputs>
16 <param label="Fasta file to convert." name="positional_1" type="data" format="fasta"/>
17 </inputs>
18 <outputs>
19 <data hidden="false" name="default" format="fasta"/>
20 </outputs>
21 <tests>
22 <test>
23 <param name="positional_1" value="result.fa"/>
24 <output name="default" file="converted_bcs.fa"/>
25 </test>
26 </tests>
27 <help><![CDATA[
28 Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.
29
30 A and G are converted to nucleotide code R. T, U and C are converted to Y.
31
32 Author: Daniel Maticzka
33 Copyright: 2015
34 License: Apache
35 Email: maticzkd@informatik.uni-freiburg.de
36 Status: Testing
37 ]]></help>
38 <expand macro="citations" />
39 </tool>