Mercurial > repos > rnateam > bctools

comparison rm_spurious_events.xml @ 50:0b9aab6aaebf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded 16cfcafe8b42055c5dd64e62c42b82b455027a40
author rnateam
date Tue, 26 Jan 2016 04:38:27 -0500
parents 1bfc5a5de843
children c226eef33bab
comparison
equal deleted inserted replaced
49:303f6402a035 50:0b9aab6aaebf
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <version_command>python rm_spurious_events.py --version</version_command> 8 <requirements>
9 <requirement type="package" version="5.18">perl</requirement>
10 <requirement type="package" version="8.22">gnu_coreutils</requirement>
11 </requirements>
12 <version_command>python $__tool_directory__/rm_spurious_events.py --version</version_command>
9 <command interpreter="python"><![CDATA[rm_spurious_events.py 13 <command interpreter="python"><![CDATA[rm_spurious_events.py
10 #if $positional_1 and $positional_1 is not None: 14 #if $positional_1 and $positional_1 is not None:
11 $positional_1 15 $positional_1
12 #end if 16 #end if
13 17
14 #if $threshold and $threshold is not None: 18 #if $threshold and $threshold is not None:
15 --threshold $threshold 19 --threshold $threshold
16 #end if 20 #end if
17 > $default]]></command> 21 --outfile $default]]></command>
18 <inputs> 22 <inputs>
19 <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/> 23 <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/>
20 <param help="(--threshold)" label="Threshold for spurious event removal." name="threshold" optional="true" type="float" value="0.1"/> 24 <param help="(--threshold)" label="Threshold for spurious event removal." name="threshold" optional="true" type="float" value="0.1"/>
21 </inputs> 25 </inputs>
22 <outputs> 26 <outputs>