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comparison flexbar_dsc.xml @ 44:0082f1be76d2 draft

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Uploaded
author rnateam
date Fri, 18 Dec 2015 10:03:20 -0500
parents ec95b7f878de
children 0df572b4d644
comparison
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43:ec95b7f878de 44:0082f1be76d2
423 <exit_code range="1:" level="fatal" description="Error!" /> 423 <exit_code range="1:" level="fatal" description="Error!" />
424 </stdio> 424 </stdio>
425 425
426 <outputs> 426 <outputs>
427 <data format="txt" name="output" metadata_source="reads"/> 427 <data format="txt" name="output" metadata_source="reads"/>
428 <collection name="list_output" type="list:paired" label="Duplicate List"> 428 <collection name="list_output" type="list:paired" label="Flexbar split reads">
429 <!-- Use named regex group to grab pattern 429 <!-- Use named regex group to grab pattern
430 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list 430 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list
431 identifier in the nested collection and identifier_1 is either 431 identifier in the nested collection and identifier_1 is either
432 forward or reverse (for instance samp1_forward.fq). 432 forward or reverse (for instance samp1_forward.fq).
433 --> 433 -->
434 <discover_datasets pattern="FlexbarOutput_barcode_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" /> 434 <discover_datasets pattern="FlexbarOutput_barcode_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" ext="fastqsanger"/>
435 </collection> 435 </collection>
436 </outputs> 436 </outputs>
437 437
438 438
439 <help> 439 <help>