|
0
|
1 <tool id="convert_bc_to_binary_RY.py" name="convert_bc_to_binary_RY.py" version="0.1.0">
|
|
|
2 <description>Convert to binary barcodes.</description>
|
|
|
3 <macros>
|
|
|
4 <import>macros.xml</import>
|
|
|
5 </macros>
|
|
|
6 <expand macro="requirements" />
|
|
|
7 <expand macro="stdio" />
|
|
|
8 <version_command>python convert_bc_to_binary_RY.py --version</version_command>
|
|
|
9 <command interpreter="python"><![CDATA[
|
|
|
10 convert_bc_to_binary_RY.py
|
|
|
11 #if $positional_1 and $positional_1 is not None:
|
|
|
12 $positional_1
|
|
|
13 #end if
|
|
|
14 > $default]]></command>
|
|
|
15 <inputs>
|
|
|
16 <param label="Fasta file to convert." name="positional_1" type="data" format="fasta"/>
|
|
|
17 </inputs>
|
|
|
18 <outputs>
|
|
|
19 <data hidden="false" name="default" format="fasta"/>
|
|
|
20 </outputs>
|
|
|
21 <tests>
|
|
|
22 <test>
|
|
|
23 <param name="positional_1" value="result.fa"/>
|
|
|
24 <output name="default" file="converted_bcs.fa"/>
|
|
|
25 </test>
|
|
|
26 </tests>
|
|
|
27 <help><![CDATA[
|
|
|
28 Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.
|
|
|
29
|
|
|
30 A and G are converted to nucleotide code R. T, U and C are converted to Y.
|
|
|
31
|
|
|
32 Author: Daniel Maticzka
|
|
|
33 Copyright: 2015
|
|
|
34 License: Apache
|
|
|
35 Email: maticzkd@informatik.uni-freiburg.de
|
|
|
36 Status: Testing
|
|
|
37 ]]></help>
|
|
|
38 <expand macro="citations" />
|
|
|
39 </tool>
|
