Mercurial > repos > recetox > xmsannotator_simple

diff xmsannotator_macros.xml @ 2:041052875af0 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/xmsannotator commit de75adf885d616bbe94c8087d3208a2b5039418e"
author recetox
date Thu, 08 Oct 2020 00:41:12 +0000
parents 02a38a19405d
children 412d8bb4b54d
line wrap: on
line diff
--- a/xmsannotator_macros.xml	Mon Oct 05 09:00:12 2020 +0000
+++ b/xmsannotator_macros.xml	Thu Oct 08 00:41:12 2020 +0000
@@ -1,24 +1,15 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.2</token>
-    <xml name="requirements">
-        <requirements>
-            <container type="docker">recetox/xmsannotator:1.3.2-recetox0</container>
-        </requirements>
-    </xml>
+    <token name="@DOCKER_IMAGE@">recetox/xmsannotator:1.3.2-recetox0</token>
 
     <xml name="annotation">
-        <param name="peaks" type="data" format="h5" label="Peaks" help="Table of peaks to annotate."/>
-        <param name="metabolites" type="data" format="h5" label="Metabolite database"/>
+        <param name="peaks" type="data" format="h5" label="Peaks" help="Peaks to annotate."/>
         <param name="adducts" type="data" format="h5" label="Adduct database"/>
-
+        <param name="compounds" type="data" format="h5" label="Compound database"/>
 
         <param name="mz_tolerance_ppm" type="float" value="5" min="0" label="Mass tolerance [ppm]" help="Mass tolerance in ppm for database matching."/>
     </xml>
 
-    <xml name="output">
-        <data format="h5" name="annotation"/>
-    </xml>
-
     <xml name="citations">
         <citations>
             <citation type="doi">10.1021/acs.analchem.6b01214</citation>