Mercurial > repos > recetox > recetox_datatypes_converters

changeset 0:dffc5740bc44 draft default tip

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"planemo upload commit 9d75007f88d8f0c351951d7f47a79c7922ef3395-dirty"
author recetox
date Tue, 25 Aug 2020 13:05:47 +0000
parents
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files feather_to_csv_converter.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/feather_to_csv_converter.xml	Tue Aug 25 13:05:47 2020 +0000
@@ -0,0 +1,23 @@
+<tool id="feather_to_csv_converter" name="Feather to CSV converter" version="master">
+    <description>converter</description>
+    <requirements>
+        <container type="docker">registry.gitlab.ics.muni.cz:443/recetox/mass-spectrometry/recetox_datatypes:master</container>
+    </requirements>
+    <command><![CDATA[
+        python /feather_to_csv.py -i '$feather' -o '$csv'
+    ]]></command>
+    <inputs>
+        <param format="feather" name="feather" type="data" label="Choose file with feather extension"/>
+    </inputs>
+    <outputs>
+        <data format="csv" name="csv"/>
+    </outputs>
+    <!-- <tests>
+        <test>
+            <param name="feather" format="feather" value="test.feather"/>
+            <output name="csv" format="csv" value="test.csv"/>
+        </test>
+    </tests> -->
+    <help>
+    </help>
+</tool>
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