# HG changeset patch
# User recetox
# Date 1598346504 0
# Node ID bfe186af3dcaa4c7e6e6c00f55a9da03a7800f25
"planemo upload commit 40818fd30d8cf43485c215e7ce10c16757024957-dirty"
diff -r 000000000000 -r bfe186af3dca aplcms_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/aplcms_macros.xml Tue Aug 25 09:08:24 2020 +0000
@@ -0,0 +1,146 @@
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+ deployment
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+ recetox_datatypes
+ registry.gitlab.ics.muni.cz:443/recetox/mass-spectrometry/aplcms:deployment
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+ apLCMS is a software which generates a feature table from a batch of LC/MS spectra. The m/z and retention time
+ tolerance levels are estimated from the data. A run-filter is used to detect peaks and remove noise.
+ Non-parametric statistical methods are used to find-tune peak selection and grouping. After retention time
+ correction, a feature table is generated by aligning peaks across spectra. For further information on apLCMS
+ please refer to http://web1.sph.emory.edu/apLCMS.
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+ 10.1093/bioinformatics/btp291
+ 10.1186/1471-2105-11-559
+ 10.1021/pr301053d
+ 10.1093/bioinformatics/btu430
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diff -r 000000000000 -r bfe186af3dca aplcms_unsupervised.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/aplcms_unsupervised.xml Tue Aug 25 09:08:24 2020 +0000
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+ aplcms_macros.xml
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+ This is the Unsupervised version of apLCMS which is not relying on any existing knowledge about metabolites or
+ any historically detected features. For such functionality please use the Hybrid version of apLCMS.
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+ @GENERAL_HELP@
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\ No newline at end of file