Mercurial > repos > recetox > recetox_aplcms_unsupervised

diff recetox_aplcms_macros.xml @ 10:6057540f65a9 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 46f606d8d234807e603b55eb2791f76663b551ee"
author recetox
date Thu, 21 Oct 2021 15:03:18 +0000
parents 6925295ae5c3
children
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--- a/recetox_aplcms_macros.xml	Tue Oct 05 13:12:50 2021 +0000
+++ b/recetox_aplcms_macros.xml	Thu Oct 21 15:03:18 2021 +0000
@@ -5,6 +5,7 @@
             <requirement type="package" version="4.1.0">r-base</requirement>
             <requirement type="package" version="4.0.1">r-arrow</requirement>
             <requirement type="package" version="0.9.3">r-recetox-aplcms</requirement>
+            <requirement type="package" version="1.0.7">r-dplyr</requirement>
         </requirements>
     </xml>
 
@@ -19,7 +20,7 @@
             <param name="files" type="data" format="mzdata,mzml,mzxml,netcdf" multiple="true" min="3" label="data"
                    help="Mass spectrometry files for peak extraction." />
             <yield />
-        </inputs>
+       </inputs>
     </xml>
 
     <xml name="history_db">
@@ -132,6 +133,11 @@
                    help="The minimum number of raw data points to be considered as a true feature." />
         </section>
     </xml>
+    <xml name="output_format">
+       <section name="output_format" title="Output Format">
+              <param name="out_format" type="boolean" checked="false" truevalue="recetox" falsevalue="original" label="Use custom RECETOX output format?" />
+       </section>
+    </xml>
 
     <xml name="unsupervised_outputs">
         <data name="recovered_feature_sample_table" format="parquet" label="${tool.name} recovered_feature_sample_table on ${on_string}" />