Mercurial > repos > recetox > recetox_aplcms_unsupervised

comparison recetox_aplcms_unsupervised.xml @ 8:6925295ae5c3 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 7b649938402c30227d8252d63e89a72f2f6fb628"
author recetox
date Thu, 19 Aug 2021 14:02:23 +0000
parents dc730394dac8
children b18c2d014b28
comparison
equal deleted inserted replaced
7:dc730394dac8 8:6925295ae5c3
1 <tool id="recetox_aplcms_unsupervised" name="apLCMS Unsupervised" version="@TOOL_VERSION@+galaxy1"> 1 <tool id="recetox_aplcms_unsupervised" name="RECETOX apLCMS Unsupervised" version="@TOOL_VERSION@+galaxy1">
2 <description>generate a feature table from LC/MS spectra</description> 2 <description>generate a feature table from LC/MS spectra</description>
3 <macros> 3 <macros>
4 <import>recetox_aplcms_macros.xml</import> 4 <import>recetox_aplcms_macros.xml</import>
5 </macros> 5 </macros>
6
7 <expand macro="requirements" /> 6 <expand macro="requirements" />
8
9 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
10 sh ${symlink_inputs} && 8 sh ${symlink_inputs} &&
11 Rscript -e 'source("${__tool_directory__}/main.R")' -e 'source("${run_script}")' 9 Rscript -e 'source("${__tool_directory__}/main.R")' -e 'source("${run_script}")'
12 ]]></command> 10 ]]></command>
13 11 <expand macro="creator" />
14 <configfiles> 12 <configfiles>
15 <configfile name="symlink_inputs"> 13 <configfile name="symlink_inputs">
16 #for $infile in $files 14 #for $infile in $files
17 ln -s '${infile}' '${infile.element_identifier}' 15 ln -s '${infile}' '${infile.element_identifier}'
18 #end for 16 #end for