comparison recetox_aplcms_unsupervised.xml @ 13:006736cab495 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b3e0c34f12c9c38fb34bf48197974620d60b50c5
author recetox
date Thu, 26 May 2022 16:44:17 +0000
parents 6eeeebc35909
children 202ac259e077
comparison
equal deleted inserted replaced
12:6eeeebc35909 13:006736cab495
51 ) 51 )
52 ]]></configfile> 52 ]]></configfile>
53 </configfiles> 53 </configfiles>
54 54
55 <expand macro="inputs"> 55 <expand macro="inputs">
56 <expand macro="noise_filtering"/> 56 <expand macro="noise_filtering">
57 <param name="min_exp" type="integer" min="1" value="2"
58 label="min_exp"
59 help="If a feature is to be included in the final feature table, it must be present in at least this number of samples." />
60 </expand>
57 <expand macro="feature_detection"/> 61 <expand macro="feature_detection"/>
58 <expand macro="peak_alignment"/> 62 <expand macro="peak_alignment"/>
59 <expand macro="weak_signal_recovery"/> 63 <expand macro="weak_signal_recovery"/>
60 <expand macro="output_format"/> 64 <expand macro="output_format"/>
61 </expand> 65 </expand>
62 66
63 <outputs> 67 <outputs>
64 <expand macro="unsupervised_outputs"/> 68 <expand macro="unsupervised_outputs">
69 <collection name="extracted_features" type="list" label="${tool.name} extracted_features on ${on_string}">
70 <discover_datasets pattern="__designation__" directory="extracted" format="parquet" />
71 </collection >
72 <collection name="corrected_features" type="list" label="${tool.name} corrected_features on ${on_string}">
73 <discover_datasets pattern="__designation__" directory="corrected" format="parquet" />
74 </collection >
75 </expand>
65 </outputs> 76 </outputs>
66 77
67 <tests> 78 <tests>
68 <test> 79 <test>
69 <param name="files" value="mbr_test0.mzml,mbr_test1.mzml,mbr_test2.mzml" ftype="mzml"/> 80 <param name="files" value="mbr_test0.mzml,mbr_test1.mzml,mbr_test2.mzml" ftype="mzml"/>