Mercurial > repos > recetox > recetox_aplcms_unsupervised
comparison recetox_aplcms_unsupervised.xml @ 13:006736cab495 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b3e0c34f12c9c38fb34bf48197974620d60b50c5
author | recetox |
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date | Thu, 26 May 2022 16:44:17 +0000 |
parents | 6eeeebc35909 |
children | 202ac259e077 |
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12:6eeeebc35909 | 13:006736cab495 |
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51 ) | 51 ) |
52 ]]></configfile> | 52 ]]></configfile> |
53 </configfiles> | 53 </configfiles> |
54 | 54 |
55 <expand macro="inputs"> | 55 <expand macro="inputs"> |
56 <expand macro="noise_filtering"/> | 56 <expand macro="noise_filtering"> |
57 <param name="min_exp" type="integer" min="1" value="2" | |
58 label="min_exp" | |
59 help="If a feature is to be included in the final feature table, it must be present in at least this number of samples." /> | |
60 </expand> | |
57 <expand macro="feature_detection"/> | 61 <expand macro="feature_detection"/> |
58 <expand macro="peak_alignment"/> | 62 <expand macro="peak_alignment"/> |
59 <expand macro="weak_signal_recovery"/> | 63 <expand macro="weak_signal_recovery"/> |
60 <expand macro="output_format"/> | 64 <expand macro="output_format"/> |
61 </expand> | 65 </expand> |
62 | 66 |
63 <outputs> | 67 <outputs> |
64 <expand macro="unsupervised_outputs"/> | 68 <expand macro="unsupervised_outputs"> |
69 <collection name="extracted_features" type="list" label="${tool.name} extracted_features on ${on_string}"> | |
70 <discover_datasets pattern="__designation__" directory="extracted" format="parquet" /> | |
71 </collection > | |
72 <collection name="corrected_features" type="list" label="${tool.name} corrected_features on ${on_string}"> | |
73 <discover_datasets pattern="__designation__" directory="corrected" format="parquet" /> | |
74 </collection > | |
75 </expand> | |
65 </outputs> | 76 </outputs> |
66 | 77 |
67 <tests> | 78 <tests> |
68 <test> | 79 <test> |
69 <param name="files" value="mbr_test0.mzml,mbr_test1.mzml,mbr_test2.mzml" ftype="mzml"/> | 80 <param name="files" value="mbr_test0.mzml,mbr_test1.mzml,mbr_test2.mzml" ftype="mzml"/> |