Mercurial > repos > recetox > recetox_aplcms_generate_feature_table
comparison mzml_id_getter.py @ 0:17de8e7ce3ce draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 506df2aef355b3791567283e1a175914f06b405a
| author | recetox |
|---|---|
| date | Mon, 13 Feb 2023 10:24:23 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:17de8e7ce3ce |
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| 1 #!/usr/bin/env python | |
| 2 | |
| 3 import argparse | |
| 4 import sys | |
| 5 | |
| 6 from pymzml.run import Reader | |
| 7 | |
| 8 | |
| 9 def main(argv): | |
| 10 parser = argparse.ArgumentParser(description='Get run ID from an mzML file.') | |
| 11 parser.add_argument('mzml_file', help='Path to an mzML file to get run ID from.') | |
| 12 args = parser.parse_args() | |
| 13 | |
| 14 mzml = Reader(args.mzml_file) | |
| 15 id = mzml.info['run_id'] | |
| 16 | |
| 17 if id is not None: | |
| 18 with open("sample_name.txt", mode='x') as f: | |
| 19 f.write(id) | |
| 20 | |
| 21 | |
| 22 if __name__ == '__main__': | |
| 23 main(sys.argv[1:]) |