Mercurial > repos > recetox > ramclustr_csv
diff ramclustr_csv.xml @ 2:08b09930cd73 draft
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit beda1b99934fb8254de04bb38e41eb9ce836d71d"
author | recetox |
---|---|
date | Thu, 04 Feb 2021 11:34:59 +0000 |
parents | d9c9ec0e2bd8 |
children | 61035548f46c |
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--- a/ramclustr_csv.xml Wed Jan 13 11:42:34 2021 +0000 +++ b/ramclustr_csv.xml Thu Feb 04 11:34:59 2021 +0000 @@ -57,6 +57,39 @@ <expand macro="output_msp"/> </outputs> + <tests> + <test> + <param name="ms" value="csv_test-input.csv" ftype="csv"/> + <param name="sample_name_column" value="1"/> + <param name="feature_delimiter" value="_"/> + <param name="retention_time_column" value="2"/> + <param name="st" value="5.0"/> + <param name="sr" value="0.5"/> + <param name="deepSplit" value="False"/> + <param name="blocksize" value="1000"/> + <param name="mult" value="1"/> + <param name="hmax" value="0.3"/> + <param name="collapse" value="True"/> + <param name="usePheno" value="True"/> + <param name="normalize" value="none"/> + <param name="qc_inj_range" value="20"/> + <param name="minModuleSize" value="2"/> + <param name="linkage" value="average"/> + <param name="mzdec" value="3"/> + <param name="cor_method" value="pearson"/> + <param name="rt_only_low_n" value="True"/> + <param name="replace_zeros" value="True"/> + <param name="Merge MSP Files" value="True"/> + <param name="maxt" value="1"/> + <output name="result" file="ramclustR-csv_object.RData"/> + <output name="spec_abundance" file="spec-abundance_csv.csv" ftype="csv"/> + <output name="method_metadata" file="metadata_csv.txt" ftype="txt"/> + <output_collection name="mass_spectra" type="list"> + <element name="fill" file="test-spectra_csv.msp" ftype="msp"/> + </output_collection> + </test> + </tests> + <help> Documentation For documentation on the tool see https://github.com/cbroeckl/RAMClustR/blob/master/vignettes/RAMClustR.Rmd