Mercurial > repos > recetox > ramclustr_csv

comparison ramclustr_csv.xml @ 1:d9c9ec0e2bd8 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit 36ea15ec5b1f1899f28c3a92d3a55dd6ac3dffae"
author recetox
date Wed, 13 Jan 2021 11:42:34 +0000
parents 43b60b28ccf7
children 08b09930cd73
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0:43b60b28ccf7 1:d9c9ec0e2bd8
8 </requirements> 8 </requirements>
9 9
10 <inputs> 10 <inputs>
11 <expand macro="parameters_csv" /> 11 <expand macro="parameters_csv" />
12 <expand macro="parameters_required" /> 12 <expand macro="parameters_required" />
13 <expand macro="parameters_optional" /> 13 <expand macro="parameters_optional_csv" />
14 </inputs> 14 </inputs>
15 15
16 <command detect_errors="aggressive"><![CDATA[ 16 <command detect_errors="aggressive"><![CDATA[
17 Rscript 17 Rscript
18 -e 'source("${__tool_directory__}/ramclustr_wrapper.R")' 18 -e 'source("${__tool_directory__}/ramclustr_wrapper.R")'
35 linkage = "$required.linkage", 35 linkage = "$required.linkage",
36 mzdec = $required.mzdec, 36 mzdec = $required.mzdec,
37 cor_method = "$required.cor_method", 37 cor_method = "$required.cor_method",
38 rt_only_low_n = $required.rt_only_low_n, 38 rt_only_low_n = $required.rt_only_low_n,
39 replace_zeros = $required.replace_zeros, 39 replace_zeros = $required.replace_zeros,
40 #if $optional.st 40 st = $ms_csv.st,
41 st = $optional.st,
42 #end if
43 #if $optional.maxt 41 #if $optional.maxt
44 maxt = $optional.maxt, 42 maxt = $optional.maxt,
45 #end if 43 #end if
46 #if $optional.fftempdir 44 #if $optional.fftempdir
47 fftempdir = $optional.fftempdir, 45 fftempdir = $optional.fftempdir,