Mercurial > repos > recetox > ramclustr

annotate test-data/lc-ramclustr-define-experiment.csv @ 12:844e308330c4 draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit f79a5b51599254817727bc9028b9797ea994cb4e
author recetox
date Tue, 27 Jun 2023 14:23:19 +0000
parents 69e0da4703b5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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1 parameter,Value,Description
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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2 ,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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3 Experimental Design,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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4 Experiment,experiment_lc,"Experiment name, no spaces."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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5 Species,mus musculus,Genus species from which samples are derived.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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6 Sample,serum,"Type of sample (e.g., serum, leaf)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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7 Contributer,recetox,Your or your PI's name.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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8 platform,LC-MS,Either GC-MS or LC-MS.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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9 ,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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10 GC-MS,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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11 chrominst,fill,Model of LC/GC instrument.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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12 msinst,fill,Model of MS instrument.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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13 column,fill,Column description.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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14 InletTemp,fill,Temperature of inlet.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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15 TransferTemp,fill,Temperature of GC to MS transfer line.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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16 mstype,fill,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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17 msmode,fill,Positive or negative ion mode.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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18 ionization,fill,"Ionization (EI, AP, or CI)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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19 msscanrange,fill,Scan range used for acquisition.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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20 scantime,fill,Time for each full scan spectrum (e.g. 0.2 seconds).
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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21 deriv,fill,"Derivitization (TMS, TBDMS, or None)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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22 MSlevs,fill,Number of levels of energy acquired - 1 typically.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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23 ,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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24 LC-MS,,
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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25 chrominst,UltiMateX 3000 BioRS System,Model of LC/GC instrument.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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26 msinst,FSN04-10000,Model of MS instrument.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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27 column,These columns enable analysis of ppm levels of amines without column priming,Column description.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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28 solvA,H20,Solvent A composition.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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29 solvB,CO2,Solvent B composition.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
recetox
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30 CE1,50,Collision energy of acquisition of MS data.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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31 CE2,100,Collision energy of acquisition for MSe/idMSMS data (when applicable).
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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32 mstype,Q,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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33 msmode,negative,Positive or negative ion mode.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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34 ionization,ESI,"Ionization (EI, AP, or CI)."
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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35 colgas,He,Gas used for collisional dissociation.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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36 msscanrange,1000,Scan range used for acquisition.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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37 conevol,12,Cone voltage used for acquisition.
69e0da4703b5 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
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38 MSlevs,1.0,Number of levels of energy acquired - 1 typically.