Mercurial > repos > recetox > october_recetox_xmsannotator_advanced

diff october_recetox_xmsannotator_advanced.xml @ 8:bdfd650ee1ab draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox-xmsannotator commit c3738524c2032daec3acb8b2d4fcbbc8abf1b5de"
author recetox
date Mon, 01 Nov 2021 14:53:29 +0000
parents a762961e2251
children c6800346a5a8
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--- a/october_recetox_xmsannotator_advanced.xml	Mon Nov 01 13:20:11 2021 +0000
+++ b/october_recetox_xmsannotator_advanced.xml	Mon Nov 01 14:53:29 2021 +0000
@@ -18,7 +18,7 @@
                 peak_table = load_peak_table_parquet("${peak_table}"),
             #end if
             ## adduct_table = load_adduct_table_parquet("${adduct_table}"),
-                adduct_weights = as.data.frame("${adduct_weights}"),
+                adduct_weights = as.data.frame(read.csv("${adduct_weights}")),
                 compound_table = load_compound_table_parquet("${compound_table}"),
                 mass_tolerance = 1e-6 * ${mass_tolerance_ppm},
                 time_tolerance = $time_tolerance,